IL_6B4V_049

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

6B4V|1|A|A|1503

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_049 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.138

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6B4V|1|A|C|1399
6B4V|1|A|5MC|1400
6B4V|1|A|G|1401
*
6B4V|1|A|C|1501
6B4V|1|A|A|1502
6B4V|1|A|A|1503
6B4V|1|A|G|1504

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain HA

mRNA

Chain IA

Transfer RNA; tRNA

Chain JA

Peptide chain release factor 1