IL_6B4V_065

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGG*UACC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_065 not in the Motif Atlas

Geometric match to IL_6CZR_136

Geometric discrepancy: 0.3602

The information below is about IL_6CZR_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05564.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

6B4V|1|B|G|272
6B4V|1|B|G|273|||A
6B4V|1|B|G|273|||B
*
6B4V|1|B|U|363|||F
6B4V|1|B|A|363|||G
6B4V|1|B|C|364
6B4V|1|B|C|365

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L9