IL_6B4V_067

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

6B4V|1|B|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_067 not in the Motif Atlas

Homologous match to IL_7RQB_011

Geometric discrepancy: 0.1454

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6B4V|1|B|C|280
6B4V|1|B|G|281
6B4V|1|B|A|282
6B4V|1|B|A|283
6B4V|1|B|U|284
*
6B4V|1|B|A|357
6B4V|1|B|U|358
6B4V|1|B|A|359
6B4V|1|B|G|360

Current chains

Chain B

23S ribosomal RNA

Nearby chains