IL_6B4V_068

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAG*UGGG

Length

7 nucleotides

Bulged bases

6B4V|1|B|G|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_068 not in the Motif Atlas

Homologous match to IL_7RQB_012

Geometric discrepancy: 0.1057

The information below is about IL_7RQB_012

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6B4V|1|B|C|288
6B4V|1|B|A|289
6B4V|1|B|G|290
*
6B4V|1|B|U|350
6B4V|1|B|G|351
6B4V|1|B|G|352
6B4V|1|B|G|353

Current chains

Chain B

23S ribosomal RNA

Nearby chains