IL_6B4V_074

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6B4V|1|B|G|801, 6B4V|1|B|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_074 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0632

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6B4V|1|B|G|674
6B4V|1|B|A|675
6B4V|1|B|A|676
6B4V|1|B|A|677
6B4V|1|B|C|678
*
6B4V|1|B|G|799
6B4V|1|B|A|800
6B4V|1|B|G|801
6B4V|1|B|A|802
6B4V|1|B|U|803
6B4V|1|B|A|804
6B4V|1|B|G|805
6B4V|1|B|C|806

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L4

Chain M

50S ribosomal protein L15