IL_6B4V_087

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UAGG*CCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_087 not in the Motif Atlas

Geometric match to IL_4V88_411

Geometric discrepancy: 0.34

The information below is about IL_4V88_411

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_46796.2

Basepair signature

cWW-tHS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

6B4V|1|B|U|877
6B4V|1|B|A|878
6B4V|1|B|G|879
6B4V|1|B|G|880
*
6B4V|1|B|C|897
6B4V|1|B|C|898
6B4V|1|B|A|899

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L16

Chain W

50S ribosomal protein L25