IL_6B4V_088

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

6B4V|1|B|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_088 not in the Motif Atlas

Geometric match to IL_4V88_409

Geometric discrepancy: 0.2734

The information below is about IL_4V88_409

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6B4V|1|B|G|880
6B4V|1|B|G|881
*
6B4V|1|B|U|895
6B4V|1|B|A|896
6B4V|1|B|C|897

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L16

Chain W

50S ribosomal protein L25