IL_6B4V_102

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

6B4V|1|B|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_102 not in the Motif Atlas

Homologous match to IL_7RQB_051

Geometric discrepancy: 0.1389

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

6B4V|1|B|G|1319
6B4V|1|B|C|1320
6B4V|1|B|A|1321
6B4V|1|B|A|1322
6B4V|1|B|U|1323
*
6B4V|1|B|A|1331
6B4V|1|B|G|1332
6B4V|1|B|C|1333

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L22