IL_6B4V_125

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_125 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.1587

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

6B4V|1|B|U|1851
6B4V|1|B|C|1852
6B4V|1|B|A|1853
6B4V|1|B|A|1854
6B4V|1|B|G|1855
*
6B4V|1|B|C|1887
6B4V|1|B|G|1888
6B4V|1|B|A|1889
6B4V|1|B|A|1890
6B4V|1|B|G|1891

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain D

Transfer RNA; tRNA

Chain E

50S ribosomal protein L2