IL_6B4V_126

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_126 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.1387

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6B4V|1|B|G|1856
6B4V|1|B|G|1857
6B4V|1|B|G|1858
6B4V|1|B|A|1859
6B4V|1|B|G|1860
*
6B4V|1|B|C|1882
6B4V|1|B|G|1883
6B4V|1|B|A|1884
6B4V|1|B|A|1885
6B4V|1|B|C|1886

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain D

Transfer RNA; tRNA

Chain Y

50S ribosomal protein L28