IL_6B4V_178
3D structure
- PDB id
- 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CAUCAG*CGACGACG
- Length
- 14 nucleotides
- Bulged bases
- 6B4V|1|EB|U|244, 6B4V|1|EB|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6B4V_178 not in the Motif Atlas
- Homologous match to IL_4LFB_011
- Geometric discrepancy: 0.0818
- The information below is about IL_4LFB_011
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.4
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6B4V|1|EB|C|242
6B4V|1|EB|A|243
6B4V|1|EB|U|244
6B4V|1|EB|C|245
6B4V|1|EB|A|246
6B4V|1|EB|G|247
*
6B4V|1|EB|C|277
6B4V|1|EB|G|278
6B4V|1|EB|A|279
6B4V|1|EB|C|280
6B4V|1|EB|G|281
6B4V|1|EB|A|282
6B4V|1|EB|C|283
6B4V|1|EB|G|284
Current chains
- Chain EB
- 16S ribosomal RNA
Nearby chains
- Chain DD
- 30S ribosomal protein S17
- Chain YC
- 30S ribosomal protein S12
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