IL_6B4V_180

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GG*UGGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_180 not in the Motif Atlas

Homologous match to IL_6CZR_125

Geometric discrepancy: 0.2057

The information below is about IL_6CZR_125

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_99460.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

6B4V|1|EB|G|292
6B4V|1|EB|G|293
*
6B4V|1|EB|U|304
6B4V|1|EB|G|305
6B4V|1|EB|G|306
6B4V|1|EB|C|307
6B4V|1|EB|C|308

Current chains

Chain EB

16S ribosomal RNA

Nearby chains

Chain CD

30S ribosomal protein S16