IL_6B4V_188

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

6B4V|1|EB|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_188 not in the Motif Atlas

Homologous match to IL_4LFB_022

Geometric discrepancy: 0.0799

The information below is about IL_4LFB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

6B4V|1|EB|C|569
6B4V|1|EB|G|570
6B4V|1|EB|U|571
6B4V|1|EB|A|572
6B4V|1|EB|A|573
6B4V|1|EB|A|574
6B4V|1|EB|G|575
*
6B4V|1|EB|C|880
6B4V|1|EB|G|881

Current chains

Chain EB

16S ribosomal RNA

Nearby chains

Chain DD

30S ribosomal protein S17

Chain RC

30S ribosomal protein S5

Chain YC

30S ribosomal protein S12