IL_6B4V_239

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_239 not in the Motif Atlas

Homologous match to IL_7RQB_016

Geometric discrepancy: 0.0634

The information below is about IL_7RQB_016

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

6B4V|1|FB|U|606
6B4V|1|FB|U|607
6B4V|1|FB|A|608
6B4V|1|FB|A|609|||A
6B4V|1|FB|G|609|||B
*
6B4V|1|FB|C|618|||B
6B4V|1|FB|G|619
6B4V|1|FB|G|620
6B4V|1|FB|A|621
6B4V|1|FB|G|622

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain KB

50S ribosomal protein L4

Chain QB

50S ribosomal protein L15