IL_6B4V_271

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

6B4V|1|FB|A|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_271 not in the Motif Atlas

Homologous match to IL_7RQB_052

Geometric discrepancy: 0.1014

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

6B4V|1|FB|C|1351
6B4V|1|FB|U|1352
6B4V|1|FB|A|1353
6B4V|1|FB|A|1354
6B4V|1|FB|G|1355
*
6B4V|1|FB|C|1376
6B4V|1|FB|G|1377
6B4V|1|FB|A|1378
6B4V|1|FB|A|1379
6B4V|1|FB|G|1380

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain IB

50S ribosomal protein L2

Chain IC

50S ribosomal protein L34