IL_6B4V_313

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_313 not in the Motif Atlas

Homologous match to IL_4WF9_092

Geometric discrepancy: 0.1414

The information below is about IL_4WF9_092

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

23

Unit IDs

6B4V|1|FB|A|2459
6B4V|1|FB|U|2460
6B4V|1|FB|C|2461
*
6B4V|1|FB|G|2489
6B4V|1|FB|G|2490
6B4V|1|FB|U|2491
6B4V|1|FB|U|2492
6B4V|1|FB|U|2493

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain MC

Transfer RNA; tRNA

Chain NC

Peptide chain release factor 1

Chain RB

50S ribosomal protein L16