IL_6B4V_322

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_322 not in the Motif Atlas

Homologous match to IL_7RQB_103

Geometric discrepancy: 0.103

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6B4V|1|FB|C|2652
6B4V|1|FB|U|2653
6B4V|1|FB|A|2654
6B4V|1|FB|G|2655
6B4V|1|FB|U|2656
6B4V|1|FB|A|2657
6B4V|1|FB|C|2658
*
6B4V|1|FB|G|2663
6B4V|1|FB|G|2664
6B4V|1|FB|A|2665
6B4V|1|FB|C|2666
6B4V|1|FB|C|2667
6B4V|1|FB|G|2668

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain MB

50S ribosomal protein L6