IL_6B4V_323

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCUCU*AUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_323 not in the Motif Atlas

Homologous match to IL_7RQB_104

Geometric discrepancy: 0.0912

The information below is about IL_7RQB_104

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

6B4V|1|FB|C|2680
6B4V|1|FB|C|2681
6B4V|1|FB|U|2682
6B4V|1|FB|C|2683
6B4V|1|FB|U|2684
*
6B4V|1|FB|A|2725
6B4V|1|FB|U|2726
6B4V|1|FB|G|2727

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain JB

50S ribosomal protein L3

Chain PB

50S ribosomal protein L14

Chain UB

50S ribosomal protein L19