IL_6B4V_330

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_330 not in the Motif Atlas

Homologous match to IL_7RQB_110

Geometric discrepancy: 0.1002

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

6B4V|1|FB|U|2847
6B4V|1|FB|G|2848
6B4V|1|FB|U|2849
6B4V|1|FB|A|2850
6B4V|1|FB|A|2851
6B4V|1|FB|G|2852
*
6B4V|1|FB|U|2865
6B4V|1|FB|U|2866
6B4V|1|FB|G|2867
6B4V|1|FB|A|2868
6B4V|1|FB|G|2869

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain SB

50S ribosomal protein L17

Chain UB

50S ribosomal protein L19