IL_6B4V_351
3D structure
- PDB id
- 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GCACUG*CAAAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6B4V_351 not in the Motif Atlas
- Geometric match to IL_4V9F_035
- Geometric discrepancy: 0.2536
- The information below is about IL_4V9F_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38603.1
- Basepair signature
- cWW-cWS-L-R-L-R-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6B4V|1|B|G|864
6B4V|1|B|C|865
6B4V|1|B|A|866
6B4V|1|B|C|867
6B4V|1|B|U|868
6B4V|1|B|G|869
*
6B4V|1|B|C|908
6B4V|1|B|A|909
6B4V|1|B|A|910
6B4V|1|B|A|911
6B4V|1|B|C|912
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain C
- 5S ribosomal RNA; 5S rRNA
- Chain N
- 50S ribosomal protein L16
- Chain W
- 50S ribosomal protein L25
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