IL_6B4V_359

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

ACG*CAGU

Length

7 nucleotides

Bulged bases

6B4V|1|B|A|2602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_359 not in the Motif Atlas

Homologous match to IL_7A0S_092

Geometric discrepancy: 0.5649

The information below is about IL_7A0S_092

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_10892.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

39

Unit IDs

6B4V|1|B|A|2590
6B4V|1|B|C|2591
6B4V|1|B|G|2592
*
6B4V|1|B|C|2601
6B4V|1|B|A|2602
6B4V|1|B|G|2603
6B4V|1|B|U|2604

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L2

Chain IA

Transfer RNA; tRNA

Chain JA

Peptide chain release factor 1