IL_6B4V_367
3D structure
- PDB id
- 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CUGCAU*AUG(2MG)
- Length
- 10 nucleotides
- Bulged bases
- 6B4V|1|EB|C|1054
- QA status
- Modified nucleotides: 2MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6B4V_367 not in the Motif Atlas
- Geometric match to IL_5J7L_362
- Geometric discrepancy: 0.2429
- The information below is about IL_5J7L_362
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49612.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6B4V|1|EB|C|1051
6B4V|1|EB|U|1052
6B4V|1|EB|G|1053
6B4V|1|EB|C|1054
6B4V|1|EB|A|1055
6B4V|1|EB|U|1056
*
6B4V|1|EB|A|1204
6B4V|1|EB|U|1205
6B4V|1|EB|G|1206
6B4V|1|EB|2MG|1207
Current chains
- Chain EB
- 16S ribosomal RNA
Nearby chains
- Chain AD
- 30S ribosomal protein S14 type Z
- Chain LC
- mRNA
- Chain NC
- Peptide chain release factor 1
- Chain PC
- 30S ribosomal protein S3
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