IL_6B4V_374

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

6B4V|1|FB|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_374 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.1316

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6B4V|1|FB|C|844
6B4V|1|FB|G|845
6B4V|1|FB|C|846
6B4V|1|FB|U|847
6B4V|1|FB|G|848
6B4V|1|FB|A|849
6B4V|1|FB|C|850
*
6B4V|1|FB|G|928
6B4V|1|FB|G|929
6B4V|1|FB|U|930
6B4V|1|FB|G|931
6B4V|1|FB|G|932
6B4V|1|FB|A|933
6B4V|1|FB|G|934

Current chains

Chain FB

23S ribosomal RNA

Nearby chains

Chain EC

50S ribosomal protein L30

Chain M

50S ribosomal protein L15