IL_6B4V_391

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AGA*UCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6B4V_391 not in the Motif Atlas

Geometric match to IL_6WBR_001

Geometric discrepancy: 0.3869

The information below is about IL_6WBR_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

6B4V|1|B|A|6
6B4V|1|B|G|7
6B4V|1|B|A|8
*
6B4V|1|B|U|2895
6B4V|1|B|C|2896
6B4V|1|B|U|2897

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L13