IL_6B4V_396
3D structure
- PDB id
- 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GACAAC*GCUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 6B4V|1|EB|U|173
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6B4V_396 not in the Motif Atlas
- Homologous match to IL_4LFB_009
- Geometric discrepancy: 0.1252
- The information below is about IL_4LFB_009
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_00680.1
- Basepair signature
- cWW-L-R-tWH-L-R-L-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6B4V|1|EB|G|148
6B4V|1|EB|A|149
6B4V|1|EB|C|150
6B4V|1|EB|A|151
6B4V|1|EB|A|152
6B4V|1|EB|C|153
*
6B4V|1|EB|G|168
6B4V|1|EB|C|169
6B4V|1|EB|U|170
6B4V|1|EB|A|171
6B4V|1|EB|A|172
6B4V|1|EB|U|173
6B4V|1|EB|C|174
Current chains
- Chain EB
- 16S ribosomal RNA
Nearby chains
- Chain GD
- 30S ribosomal protein S20
Coloring options: