IL_6BOH_007

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

6BOH|1|A|G|129|||B, 6BOH|1|A|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_007 not in the Motif Atlas

Homologous match to IL_6CZR_119

Geometric discrepancy: 0.2066

The information below is about IL_6CZR_119

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_33761.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

6BOH|1|A|U|129|||A
6BOH|1|A|G|129|||B
6BOH|1|A|A|130
6BOH|1|A|C|131
*
6BOH|1|A|G|231
6BOH|1|A|G|232

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain AB

30S ribosomal protein S17

Chain DB

30S ribosomal protein S20

Chain ZA

30S ribosomal protein S16