3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
UGAC*GG
Length
6 nucleotides
Bulged bases
6BOH|1|A|G|129|||B, 6BOH|1|A|A|130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BOH_007 not in the Motif Atlas
Homologous match to IL_6CZR_119
Geometric discrepancy: 0.2066
The information below is about IL_6CZR_119
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_33761.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
4

Unit IDs

6BOH|1|A|U|129|||A
6BOH|1|A|G|129|||B
6BOH|1|A|A|130
6BOH|1|A|C|131
*
6BOH|1|A|G|231
6BOH|1|A|G|232

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain AB
30S ribosomal protein S17
Chain DB
30S ribosomal protein S20
Chain ZA
30S ribosomal protein S16

Coloring options:


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