3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GCAAU*AC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BOH_015 not in the Motif Atlas
Homologous match to IL_5J7L_018
Geometric discrepancy: 0.1158
The information below is about IL_5J7L_018
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_03109.3
Basepair signature
cWW-cWS-tWH-cWW-L
Number of instances in this motif group
6

Unit IDs

6BOH|1|A|G|371
6BOH|1|A|C|372
6BOH|1|A|A|373
6BOH|1|A|A|374
6BOH|1|A|U|375
*
6BOH|1|A|A|389
6BOH|1|A|C|390

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain ZA
30S ribosomal protein S16

Coloring options:


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