3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GAAACC*GACUGAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BOH_019 not in the Motif Atlas
Homologous match to IL_4LFB_019
Geometric discrepancy: 0.1051
The information below is about IL_4LFB_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_31561.1
Basepair signature
cWW-L-R-tWH-tWH-L-R-L-cWW
Number of instances in this motif group
1

Unit IDs

6BOH|1|A|G|450
6BOH|1|A|A|451
6BOH|1|A|A|452
6BOH|1|A|A|453
6BOH|1|A|C|454
6BOH|1|A|C|455
*
6BOH|1|A|G|477
6BOH|1|A|A|478
6BOH|1|A|C|479
6BOH|1|A|U|480
6BOH|1|A|G|481
6BOH|1|A|A|482
6BOH|1|A|C|483

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain ZA
30S ribosomal protein S16

Coloring options:


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