IL_6BOH_021
3D structure
- PDB id
- 6BOH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6BOH|1|A|A|532, 6BOH|1|A|U|534
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6BOH_021 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.0879
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.4
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6BOH|1|A|G|515
6BOH|1|A|PSU|516
6BOH|1|A|G|517
6BOH|1|A|C|518
6BOH|1|A|C|519
6BOH|1|A|A|520
6BOH|1|A|G|521
*
6BOH|1|A|C|528
6BOH|1|A|G|529
6BOH|1|A|G|530
6BOH|1|A|U|531
6BOH|1|A|A|532
6BOH|1|A|A|533
6BOH|1|A|U|534
6BOH|1|A|A|535
6BOH|1|A|C|536
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain HA
- mRNA
- Chain JA
- Peptide chain release factor 1
- Chain KA
- Peptide chain release factor 1
- Chain MA
- 30S ribosomal protein S3
- Chain NA
- 50S ribosomal protein S4
- Chain VA
- 30S ribosomal protein S12
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