IL_6BOH_023
3D structure
- PDB id
- 6BOH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- UGUAG*UGAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6BOH_023 not in the Motif Atlas
- Homologous match to IL_4LFB_023
- Geometric discrepancy: 0.1182
- The information below is about IL_4LFB_023
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
6BOH|1|A|U|580
6BOH|1|A|G|581
6BOH|1|A|U|582
6BOH|1|A|A|583
6BOH|1|A|G|584
*
6BOH|1|A|U|757
6BOH|1|A|G|758
6BOH|1|A|A|759
6BOH|1|A|G|760
6BOH|1|A|G|761
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain AB
- 30S ribosomal protein S17
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain RA
- 30S ribosomal protein S8
- Chain VA
- 30S ribosomal protein S12
- Chain YA
- 30S ribosomal protein S15
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