3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
UGUAG*UGAGG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BOH_023 not in the Motif Atlas
Homologous match to IL_4LFB_023
Geometric discrepancy: 0.1182
The information below is about IL_4LFB_023
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

6BOH|1|A|U|580
6BOH|1|A|G|581
6BOH|1|A|U|582
6BOH|1|A|A|583
6BOH|1|A|G|584
*
6BOH|1|A|U|757
6BOH|1|A|G|758
6BOH|1|A|A|759
6BOH|1|A|G|760
6BOH|1|A|G|761

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain AB
30S ribosomal protein S17
Chain B
Large subunit ribosomal RNA; LSU rRNA
Chain RA
30S ribosomal protein S8
Chain VA
30S ribosomal protein S12
Chain YA
30S ribosomal protein S15

Coloring options:


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