IL_6BOH_029

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

6BOH|1|A|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_029 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.1106

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6BOH|1|A|G|662
6BOH|1|A|A|663
6BOH|1|A|G|664
6BOH|1|A|A|665
6BOH|1|A|G|666
*
6BOH|1|A|U|740
6BOH|1|A|G|741
6BOH|1|A|G|742
6BOH|1|A|U|743

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain BB

30S ribosomal protein S18

Chain PA

30S ribosomal protein S6

Chain YA

30S ribosomal protein S15