3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GAC*GUAC
Length
7 nucleotides
Bulged bases
6BOH|1|A|A|1394
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BOH_035 not in the Motif Atlas
Geometric match to IL_4V9F_097
Geometric discrepancy: 0.2771
The information below is about IL_4V9F_097
Detailed Annotation
Isolated non-canonical cWW with bulges
Broad Annotation
Isolated non-canonical cWW with bulges
Motif group
IL_07785.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

6BOH|1|A|G|922
6BOH|1|A|A|923
6BOH|1|A|C|924
*
6BOH|1|A|G|1392
6BOH|1|A|U|1393
6BOH|1|A|A|1394
6BOH|1|A|C|1395

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain OA
30S ribosomal protein S5

Coloring options:


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