IL_6BOH_035

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAC*GUAC

Length

7 nucleotides

Bulged bases

6BOH|1|A|A|1394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_035 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.2771

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6BOH|1|A|G|922
6BOH|1|A|A|923
6BOH|1|A|C|924
*
6BOH|1|A|G|1392
6BOH|1|A|U|1393
6BOH|1|A|A|1394
6BOH|1|A|C|1395

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain OA

30S ribosomal protein S5