3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CG*CUG
Length
5 nucleotides
Bulged bases
6BOH|1|A|U|1196
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BOH_042 not in the Motif Atlas
Homologous match to IL_6CZR_156
Geometric discrepancy: 0.1275
The information below is about IL_6CZR_156
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.3
Basepair signature
cWW-L-cWW
Number of instances in this motif group
123

Unit IDs

6BOH|1|A|C|1060
6BOH|1|A|G|1061
*
6BOH|1|A|C|1195
6BOH|1|A|U|1196
6BOH|1|A|G|1197

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain HA
mRNA
Chain JA
Peptide chain release factor 1
Chain MA
30S ribosomal protein S3
Chain OA
30S ribosomal protein S5
Chain SA
30S ribosomal protein S9
Chain TA
30S ribosomal protein S10
Chain XA
30S ribosomal protein S14 type Z

Coloring options:


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