IL_6BOH_076

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6BOH|1|B|G|801, 6BOH|1|B|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_076 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0617

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6BOH|1|B|G|674
6BOH|1|B|A|675
6BOH|1|B|A|676
6BOH|1|B|A|677
6BOH|1|B|C|678
*
6BOH|1|B|G|799
6BOH|1|B|A|800
6BOH|1|B|G|801
6BOH|1|B|A|802
6BOH|1|B|U|803
6BOH|1|B|A|804
6BOH|1|B|G|805
6BOH|1|B|C|806

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L4

Chain M

50S ribosomal protein L15