IL_6BOH_130
3D structure
- PDB id
- 6BOH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CGAAA(5MU)UC(5MC)UUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 6BOH|1|B|A|1938, 6BOH|1|B|C|1941, 6BOH|1|B|U|1944, 6BOH|1|B|U|1963
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6BOH_130 not in the Motif Atlas
- Geometric match to IL_4WF9_077
- Geometric discrepancy: 0.1349
- The information below is about IL_4WF9_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42218.2
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-L-R-L
- Number of instances in this motif group
- 5
Unit IDs
6BOH|1|B|C|1934
6BOH|1|B|G|1935
6BOH|1|B|A|1936
6BOH|1|B|A|1937
6BOH|1|B|A|1938
6BOH|1|B|5MU|1939
6BOH|1|B|U|1940
6BOH|1|B|C|1941
6BOH|1|B|5MC|1942
6BOH|1|B|U|1943
6BOH|1|B|U|1944
6BOH|1|B|G|1945
*
6BOH|1|B|C|1961
6BOH|1|B|5MC|1962
6BOH|1|B|U|1963
6BOH|1|B|G|1964
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain E
- 50S ribosomal protein L2
Coloring options: