3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CGAAA(5MU)UC(5MC)UUG*C(5MC)UG
Length
16 nucleotides
Bulged bases
6BOH|1|B|A|1938, 6BOH|1|B|C|1941, 6BOH|1|B|U|1944, 6BOH|1|B|U|1963
QA status
Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BOH_130 not in the Motif Atlas
Geometric match to IL_4WF9_077
Geometric discrepancy: 0.1349
The information below is about IL_4WF9_077
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42218.2
Basepair signature
cWW-L-R-cHW-cWW-L-L-L-R-L
Number of instances in this motif group
5

Unit IDs

6BOH|1|B|C|1934
6BOH|1|B|G|1935
6BOH|1|B|A|1936
6BOH|1|B|A|1937
6BOH|1|B|A|1938
6BOH|1|B|5MU|1939
6BOH|1|B|U|1940
6BOH|1|B|C|1941
6BOH|1|B|5MC|1942
6BOH|1|B|U|1943
6BOH|1|B|U|1944
6BOH|1|B|G|1945
*
6BOH|1|B|C|1961
6BOH|1|B|5MC|1962
6BOH|1|B|U|1963
6BOH|1|B|G|1964

Current chains

Chain B
23S ribosomal RNA

Nearby chains

Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain E
50S ribosomal protein L2

Coloring options:


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