3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CCGAG*CGGCG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BOH_146 not in the Motif Atlas
Homologous match to IL_7RQB_095
Geometric discrepancy: 0.1397
The information below is about IL_7RQB_095
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_56467.8
Basepair signature
cWW-tSH-tSH-tHS-cWW
Number of instances in this motif group
29

Unit IDs

6BOH|1|B|C|2466
6BOH|1|B|C|2467
6BOH|1|B|G|2468
6BOH|1|B|A|2469
6BOH|1|B|G|2470
*
6BOH|1|B|C|2480
6BOH|1|B|G|2481
6BOH|1|B|G|2482
6BOH|1|B|C|2483
6BOH|1|B|G|2484

Current chains

Chain B
23S ribosomal RNA

Nearby chains

Chain GA
50S ribosomal protein L36
Chain N
50S ribosomal protein L16
Chain W
50S ribosomal protein L25

Coloring options:


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