IL_6BOH_146

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_146 not in the Motif Atlas

Homologous match to IL_7RQB_095

Geometric discrepancy: 0.1397

The information below is about IL_7RQB_095

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6BOH|1|B|C|2466
6BOH|1|B|C|2467
6BOH|1|B|G|2468
6BOH|1|B|A|2469
6BOH|1|B|G|2470
*
6BOH|1|B|C|2480
6BOH|1|B|G|2481
6BOH|1|B|G|2482
6BOH|1|B|C|2483
6BOH|1|B|G|2484

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain GA

50S ribosomal protein L36

Chain N

50S ribosomal protein L16

Chain W

50S ribosomal protein L25