IL_6BOH_154

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_154 not in the Motif Atlas

Homologous match to IL_7RQB_103

Geometric discrepancy: 0.0881

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6BOH|1|B|C|2652
6BOH|1|B|U|2653
6BOH|1|B|A|2654
6BOH|1|B|G|2655
6BOH|1|B|U|2656
6BOH|1|B|A|2657
6BOH|1|B|C|2658
*
6BOH|1|B|G|2663
6BOH|1|B|G|2664
6BOH|1|B|A|2665
6BOH|1|B|C|2666
6BOH|1|B|C|2667
6BOH|1|B|G|2668

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L6