IL_6BOH_189
3D structure
- PDB id
- 6BOH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- UGUAG*UGAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6BOH_189 not in the Motif Atlas
- Homologous match to IL_4LFB_023
- Geometric discrepancy: 0.1138
- The information below is about IL_4LFB_023
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
6BOH|1|FB|U|580
6BOH|1|FB|G|581
6BOH|1|FB|U|582
6BOH|1|FB|A|583
6BOH|1|FB|G|584
*
6BOH|1|FB|U|757
6BOH|1|FB|G|758
6BOH|1|FB|A|759
6BOH|1|FB|G|760
6BOH|1|FB|G|761
Current chains
- Chain FB
- 16S ribosomal RNA
Nearby chains
- Chain AD
- 30S ribosomal protein S12
- Chain DD
- 30S ribosomal protein S15
- Chain FD
- 30S ribosomal protein S17
- Chain GB
- Large subunit ribosomal RNA; LSU rRNA
- Chain WC
- 30S ribosomal protein S8
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