IL_6BOH_200

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_200 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0893

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

6BOH|1|FB|G|887
6BOH|1|FB|G|888
6BOH|1|FB|A|889
6BOH|1|FB|G|890
6BOH|1|FB|U|891
6BOH|1|FB|A|892
6BOH|1|FB|C|893
6BOH|1|FB|G|894
*
6BOH|1|FB|U|905
6BOH|1|FB|G|906
6BOH|1|FB|A|907
6BOH|1|FB|A|908
6BOH|1|FB|A|909
6BOH|1|FB|C|910

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S12