IL_6BOH_205

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6BOH|1|FB|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_205 not in the Motif Atlas

Geometric match to IL_4LFB_042

Geometric discrepancy: 0.1486

The information below is about IL_4LFB_042

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6BOH|1|FB|G|1048
6BOH|1|FB|U|1049
6BOH|1|FB|G|1050
*
6BOH|1|FB|C|1208
6BOH|1|FB|C|1209

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain CD

30S ribosomal protein S14 type Z

Chain PC

Peptide chain release factor 1