3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GUC*GUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BOH_209 not in the Motif Atlas
Geometric match to IL_4LFB_047
Geometric discrepancy: 0.1138
The information below is about IL_4LFB_047
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_28037.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
65

Unit IDs

6BOH|1|FB|G|1061
6BOH|1|FB|U|1062
6BOH|1|FB|C|1063
*
6BOH|1|FB|G|1193
6BOH|1|FB|U|1194
6BOH|1|FB|C|1195

Current chains

Chain FB
16S ribosomal RNA

Nearby chains

Chain CD
30S ribosomal protein S14 type Z
Chain OC
Peptide chain release factor 1
Chain RC
30S ribosomal protein S3
Chain TC
30S ribosomal protein S5
Chain XC
30S ribosomal protein S9
Chain YC
30S ribosomal protein S10

Coloring options:


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