IL_6BOH_215

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_215 not in the Motif Atlas

Geometric match to IL_4V88_461

Geometric discrepancy: 0.3392

The information below is about IL_4V88_461

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

6BOH|1|FB|C|1259
6BOH|1|FB|C|1260
6BOH|1|FB|A|1261
6BOH|1|FB|C|1262
*
6BOH|1|FB|G|1273
6BOH|1|FB|G|1274
6BOH|1|FB|A|1275
6BOH|1|FB|G|1276

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain JD

30S ribosomal protein Thx