3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CCAC*GGAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BOH_215 not in the Motif Atlas
Geometric match to IL_4V88_461
Geometric discrepancy: 0.3392
The information below is about IL_4V88_461
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_36174.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
15

Unit IDs

6BOH|1|FB|C|1259
6BOH|1|FB|C|1260
6BOH|1|FB|A|1261
6BOH|1|FB|C|1262
*
6BOH|1|FB|G|1273
6BOH|1|FB|G|1274
6BOH|1|FB|A|1275
6BOH|1|FB|G|1276

Current chains

Chain FB
16S ribosomal RNA

Nearby chains

Chain JD
30S ribosomal protein Thx

Coloring options:


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