IL_6BOH_239

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_239 not in the Motif Atlas

Homologous match to IL_4WF9_017

Geometric discrepancy: 0.1842

The information below is about IL_4WF9_017

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6BOH|1|GB|C|564
6BOH|1|GB|C|565
6BOH|1|GB|U|566
*
6BOH|1|GB|A|575
6BOH|1|GB|U|576
6BOH|1|GB|G|577

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain KB

50S ribosomal protein L3

Chain LB

50S ribosomal protein L4

Chain RB

50S ribosomal protein L15

Chain WB

50S ribosomal protein L20

Chain XB

50S ribosomal protein L21