IL_6BOH_240

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_240 not in the Motif Atlas

Homologous match to IL_7RQB_016

Geometric discrepancy: 0.0629

The information below is about IL_7RQB_016

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

6BOH|1|GB|U|606
6BOH|1|GB|U|607
6BOH|1|GB|A|608
6BOH|1|GB|A|609|||A
6BOH|1|GB|G|609|||B
*
6BOH|1|GB|C|618|||B
6BOH|1|GB|G|619
6BOH|1|GB|G|620
6BOH|1|GB|A|621
6BOH|1|GB|G|622

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain LB

50S ribosomal protein L4

Chain RB

50S ribosomal protein L15