IL_6BOH_245

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_245 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.0889

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6BOH|1|GB|U|703
6BOH|1|GB|G|704
6BOH|1|GB|A|705
6BOH|1|GB|A|706
6BOH|1|GB|G|707
*
6BOH|1|GB|U|724
6BOH|1|GB|G|725
6BOH|1|GB|G|726
6BOH|1|GB|A|727
6BOH|1|GB|G|728

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain JB

50S ribosomal protein L2