IL_6BOH_272

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_272 not in the Motif Atlas

Homologous match to IL_7RQB_053

Geometric discrepancy: 0.2161

The information below is about IL_7RQB_053

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

6BOH|1|GB|U|1357
6BOH|1|GB|G|1358
6BOH|1|GB|A|1359
6BOH|1|GB|A|1360
6BOH|1|GB|G|1361
*
6BOH|1|GB|C|1370
6BOH|1|GB|G|1371
6BOH|1|GB|U|1372
6BOH|1|GB|A|1373
6BOH|1|GB|G|1374

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain DC

50S ribosomal protein L28

Chain JB

50S ribosomal protein L2

Chain JC

50S ribosomal protein L34