IL_6BOH_273

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UG*CACAA

Length

7 nucleotides

Bulged bases

6BOH|1|GB|C|1585

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_273 not in the Motif Atlas

Homologous match to IL_7RQB_054

Geometric discrepancy: 0.1551

The information below is about IL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_67474.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6BOH|1|GB|U|1415
6BOH|1|GB|G|1416
*
6BOH|1|GB|C|1582
6BOH|1|GB|A|1583
6BOH|1|GB|C|1585
6BOH|1|GB|A|1586
6BOH|1|GB|A|1587

Current chains

Chain GB

23S ribosomal RNA

Nearby chains