3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
UG*CACAA
Length
7 nucleotides
Bulged bases
6BOH|1|GB|C|1585
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BOH_273 not in the Motif Atlas
Homologous match to IL_7RQB_054
Geometric discrepancy: 0.1551
The information below is about IL_7RQB_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_67474.4
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
3

Unit IDs

6BOH|1|GB|U|1415
6BOH|1|GB|G|1416
*
6BOH|1|GB|C|1582
6BOH|1|GB|A|1583
6BOH|1|GB|C|1585
6BOH|1|GB|A|1586
6BOH|1|GB|A|1587

Current chains

Chain GB
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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