IL_6BOH_282

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

6BOH|1|GB|C|1544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_282 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.1146

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6BOH|1|GB|G|1526
6BOH|1|GB|G|1527
6BOH|1|GB|A|1528
6BOH|1|GB|A|1529
6BOH|1|GB|G|1530
*
6BOH|1|GB|U|1541
6BOH|1|GB|G|1542
6BOH|1|GB|A|1543
6BOH|1|GB|C|1544
6BOH|1|GB|A|1545
6BOH|1|GB|A|1546
6BOH|1|GB|C|1546|||B

Current chains

Chain GB

23S ribosomal RNA

Nearby chains