3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GGAAG*UGACAAC
Length
12 nucleotides
Bulged bases
6BOH|1|GB|C|1544
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BOH_282 not in the Motif Atlas
Homologous match to IL_7RQB_063
Geometric discrepancy: 0.1146
The information below is about IL_7RQB_063
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_02656.1
Basepair signature
cWW-L-R-L-R-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

6BOH|1|GB|G|1526
6BOH|1|GB|G|1527
6BOH|1|GB|A|1528
6BOH|1|GB|A|1529
6BOH|1|GB|G|1530
*
6BOH|1|GB|U|1541
6BOH|1|GB|G|1542
6BOH|1|GB|A|1543
6BOH|1|GB|C|1544
6BOH|1|GB|A|1545
6BOH|1|GB|A|1546
6BOH|1|GB|C|1546|||B

Current chains

Chain GB
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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