IL_6BOH_293

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UCAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_293 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.1211

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra pair

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

6BOH|1|GB|U|1851
6BOH|1|GB|C|1852
6BOH|1|GB|A|1853
6BOH|1|GB|A|1854
6BOH|1|GB|G|1855
*
6BOH|1|GB|C|1887
6BOH|1|GB|G|1888
6BOH|1|GB|A|1889
6BOH|1|GB|A|1890
6BOH|1|GB|G|1891

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain IB

Transfer RNA; tRNA

Chain JB

50S ribosomal protein L2