IL_6BOH_295

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_295 not in the Motif Atlas

Geometric match to IL_5J7L_318

Geometric discrepancy: 0.0811

The information below is about IL_5J7L_318

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

6BOH|1|GB|G|1933
6BOH|1|GB|C|1934
*
6BOH|1|GB|G|1964
6BOH|1|GB|C|1965
6BOH|1|GB|A|1966
6BOH|1|GB|C|1967

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain NC

Transfer RNA; tRNA